Total number of individuals: 777

Number of individuals with 0 missing data: 668
Number of individuals with 1 missing data: 68
Number of individuals with 2 missing data: 41

Phenotypic Mean = 0.528129
Standard Error  = 0.102162



Allele frequency at locus 1 (G/A) 0.76048 / 0.23952	p(HWE) = 0.227897
Allele frequency at locus 2 (C/T) 0.59880 / 0.40120	p(HWE) = 0.293616

Frequencies of Plausible Haplotype under Linkage Equilibrium

Haplotype [0]	GC	0.455377
Haplotype [1]	GT	0.305102
Haplotype [2]	AC	0.143426
Haplotype [3]	AT	0.096095


After 2501 iterations burn at step 1500


Estimated Haplotype Frequencies under Linkage Disequilibrium

				Estimation	StError		T-Test

Haplotype 1 [0] 	GC	0.447069
Haplotype 2 [1] 	GT	0.313410	0.014108	22.215651
Haplotype 3 [2] 	AC	0.151734	0.011732	12.933010
Haplotype 4 [3] 	AT	0.087787	0.009531	9.210329



			Haplotype Effects
				Estimation	StError		T-Test

Intercept	0.296338	0.005028


Global Standard Error   0.102162
Residual Standard Error 0.081730

			Covariable Adjustment
Covariate 1 
Column Number 5 		-0.039670	0.006505	-6.098345
			Diff = -0.03967 [-0.05242 - -0.02692]  p=0.000000

Covariate 2 
Column Number 6 		0.054967	0.003217	17.085495
			Diff = 0.05497 [0.04866 - 0.06127]  p=0.000000



Log-likelihood = -516.857287 (Nb studied subjects = 668)
Conditionnal Log-likelihood = 725.543449 (df =  3)





			LD MATRIX

		 -0.09	
			
		

			P-Value MATRIX

		 0.147	
			
		